The new potential sexual assault case they cite sounds like nothing came of it for potentially good reasons. But there are other reports of assaults and domestic violence incidents cited, and allegations that the Waco police department went to extraordinary measure to limit information and publicity around some of the incidents.
http://espn.go.com/espn/otl/story/_...-violence-allegations-baylor-football-players
http://espn.go.com/espn/otl/story/_...-violence-allegations-baylor-football-players